OSS-register: Overzicht

A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment

TrueConsense is a consensus caller for viral-targets that create biologically correct consensus sequences. TrueConsense keeps track of open reading frames, compensates for common sequencing or alignment artefacts, and is able to generate consensus sequences on multiple coverage-thresholds at the same time

Pipeline to perform cgMLST (or wgMLST) analysis. At the moment it just handles few genera for cgMLST

Pipeline to process raw sequencing data up to de-novo assembly and the accompanying statistics

AminoExtract is a tool for translating and extracting amino acid sequences from nucleotide-sequences based on a GFF input

Pipeline to perform bacterial typing (7-locus MLST and serotyping when appropriate). It works with several (but not all) species/genera.

Apollo pipeline for the interpretation of variants identified through reference-based mapping

Reference mapping workflow for the analysis of fungal samples

De Data-InfrAstructure for ParEnts and ChildRen, DIAPER is geschikt voor onderzoek rondom geboortezorg, zwangerschap en bevalling, en de eerste jaren van het leven. Het RIVM gebruikt DIAPER voor verschillende monitors in de geboortezorg.

gen-epix-e2e

Package containing the basic classes that are used as base for the wrappers of the other Juno pipelines

Operationele Prioritaire Stoffen model

Tool to determine in-silico MLVA for MRSA isolates

Code for data cleaning and analysis of Pienter3 and PienterCorona contact surveys