Alle open source repositories van de Nederlandse overheid op één plek.
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iDMS_common_constants
iDMS_common_constantsiDMS_common_filesys
iDMS_common_filesysiDMS_common_irods
iDMS_common_irodsiDMS_persistence
iDMS_persistenceiDMS_web
iDMS_webids_bacteriology_man
Code for the website used for documenting bacteriology pipelines (tailor made for RIVM people). Written in R (bookdown)
in-silico-mlva
Tool to determine in-silico MLVA for MRSA isolates
intorods
irods_rename
Rename files from an iRODS collection
juno-amr
juno-annotation
Annotation of chromosomes and plasmids of bacteria (AMR group)
juno-assembly
Pipeline to process raw sequencing data up to de-novo assembly and the accompanying statistics
juno-assembly-verification
Juno-assembly verificationjuno-blast
Automated BLASTing from fasta files.
juno-cgmlst
Pipeline to perform cgMLST (or wgMLST) analysis. At the moment it just handles few genera for cgMLST
juno-clustering
Pipeline to cluster cgMLST or SNP data
juno-library
Package containing the basic classes that are used as base for the wrappers of the other Juno pipelines
juno-mapping
Reference-based mapping Juno pipeline
juno-population
Juno-PopulationJuno-seroba
Pipeline for serotyping Streptococcus pneumoniae (to be merged in Juno-typing).