Alle open source repositories van de Nederlandse overheid op één plek.
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juno-snp
Pipeline to perform SNP analysis in bacterial samples.
juno-typing
Pipeline to perform bacterial typing (7-locus MLST and serotyping when appropriate). It works with several (but not all) species/genera.
juno-variant-typing
Juno pipeline for the interpretation of variants identified through reference-based mapping
Juno_pipeline_ion
Repository is een git forkPipeline to process raw sequencing data up to de-novo assembly and the accompanying statistics(iontorrent edition)
KRWQCprotocol
KRWQCprotocol - R package voor QC controleKRWTrends
KRWTrendsloculus
Repository is een git forkAn open-source software package to power microbial genomic databases
loculus-tools
A collection of web based tooling to enable curation and ad-hoc analysis through the loculus platform
loobos2324-nh3-flux-code
This repository contains code to reproduce analysis and results for the study on biosphere–atmosphere ammonia exchange over a temperate Scots pine forest in the Netherlands (Aug 2023–Sep 2024), focusing on NH₃ fluxes, exchange mechanisms, and links to ecosystem carbon uptake.
LSP-juno-cgmlst
Repository is een git forkTemporary copy of the Juno-cgMLST pipeline.
matching-complex-food-terms
Code for the analysis and data processing performed for a poster submission for SEMANTICS 2026, which addresses the challenge of matching complex food terms (like 'textured soy protein') to FoodON classes.
mcra-core
me2tools
Tools for processing the input and output of the Multilineair Engine version 2 (ME-2) and MetCor
MicroplasticsERA_water
Data and code used for ecological risk assessment of microplastics supporting RIVM letter report 2026-0069
ModMet
# ModMet: Modular Meteorology Functions
mpox-network
This repository accompanies the study by Miura and Leung et al. (2025), Dynamic shift in the dominant transmission route of clade Ib mpox virus across networks with sexual and non-sexual contacts
Mpox-Vac-RiskChanges
Mpox-Vac-RiskChanges This repository contains files and code used for a modelling study investigating the impact of hypothetical future introductions of mpox cases among men who have sex with men (MSM) in the Netherlands. We investigated the impact of new introductions assuming no vaccinations after 2023 or with additional vaccinations in 2024-2025. The model accounts for 3 levels of sexual activity, based on the number of sexual partners: low, medium, and high levels. Furthermore, we accounted for possible transitions of MSM between the sexual activity groups: men with a low level of sexual activity may have later a medium or high level and vice versa.msPAF
msPAF The msPAF calculator is devoloped within the project 'Kennisimpuls Watwerkwaliteit' and is the result of a collaboration between Dutch governmental bodies, Provinces, Waterboards, drinking water companies and knowledge institutes. The project is financed by the Ministry of Infrastructure and Water management, STOWA, waterboards, provinces and drinkingwater companies.msPAFcalculator
msPAFcalculator
mumps_serology
Mumps serology