Open Source Register: Overzicht

experimental java jp2 viewer using jni bindings with openjpeg2.0

Test scripts and resources for jpeg quality assessment

Automated JP2 profiling for digitisation batches

JP2 (JPEG 2000 Part 1) validator and properties extractor. Jpylyzer was specifically created to check that a JP2 file really conforms to the format's specifications. Additionally jpylyzer is able to extract the technical characteristics of each image.

A base project

This is an example of how JSON-FG data can be shown in an Openlayers map. It shows the shape of Dutch municipality borders over time.

JSON-FG encoding and decoding library for Java.

Annotation of chromosomes and plasmids of bacteria (AMR group)

Pipeline to process raw sequencing data up to de-novo assembly and the accompanying statistics

Automated BLASTing from fasta files.

Pipeline to perform cgMLST (or wgMLST) analysis. At the moment it just handles few genera for cgMLST

Pipeline to cluster cgMLST or SNP data

Package containing the basic classes that are used as base for the wrappers of the other Juno pipelines

Reference-based mapping Juno pipeline

Pipeline for serotyping Streptococcus pneumoniae (to be merged in Juno-typing).

Pipeline to perform SNP analysis in bacterial samples.