Open Source Register: Overzicht

Annotation of chromosomes and plasmids of bacteria (AMR group)

Pipeline to process raw sequencing data up to de-novo assembly and the accompanying statistics

Automated BLASTing from fasta files.

Pipeline to perform cgMLST (or wgMLST) analysis. At the moment it just handles few genera for cgMLST

Pipeline to cluster cgMLST or SNP data

Package containing the basic classes that are used as base for the wrappers of the other Juno pipelines

Reference-based mapping Juno pipeline

Pipeline for serotyping Streptococcus pneumoniae (to be merged in Juno-typing).

Pipeline to perform SNP analysis in bacterial samples.

Pipeline to perform bacterial typing (7-locus MLST and serotyping when appropriate). It works with several (but not all) species/genera.

Juno pipeline for the interpretation of variants identified through reference-based mapping

Pipeline to process raw sequencing data up to de-novo assembly and the accompanying statistics(iontorrent edition)

Custom Swirrl widget for Jupyter Lab

Custom syntax highlighting for TAGML in the CodeMirror-based editor of jupyterlab

JWKS-endpoint (Azure Function + Key Vault) als referentie-implementatie voor gemeenten die API's van Wigo4it aanroepen; overgenomen van azure-jwks-publisher

A reverse proxy which validates access using JWT.