Open Source Register: Overzicht

Snakemake workflow to assemble long read data

TrueConsense is a consensus caller for viral-targets that create biologically correct consensus sequences. TrueConsense keeps track of open reading frames, compensates for common sequencing or alignment artefacts, and is able to generate consensus sequences on multiple coverage-thresholds at the same time

VirASM is a quick and minimal pipeline to assemble metagenomics/viromics samples from illumina data

ViroConstrictor is a pipeline designed to process raw FastQ data from viral amplicon-based sequencing and generate biologically correct consensus sequences of the given viral genome

Ramon WGS project pipeline

Wastewater monitoring of SARS-CoV-2 at Schiphol Airport